PB-SAM Program detailsΒΆ
Some details about the code: it is written in C++11 and it has some linear algebra utilities and OMP parallelism implemented.
Below is a flow diagram of the program from call to finish.

Additionally, some of the pre-run components are quite time-consuming to compute, so if they are not included as inputs, they will be printed to the working directory. They can then be used for future runs, forgoing the need to re-calculate them.